Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX247780: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-221771' containing sample 'Escherichia coli HVH 143 (4-5674999)'
1 ILLUMINA (Illumina HiSeq 2000) run: 1.8M spots, 356.4M bases, 171.7Mb downloads

UUID: 16b3cf55-b458-4bfc-96fe-a382863ff474

Design: Illumina sequencing of Escherichia coli HVH 143 (4-5674999) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186175 • SRP019107 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 143 (4-5674999)

SAMN01885788 • SRS399653 • All experiments • All runs

Organism: Escherichia coli HVH 143 (4-5674999)

Library:

Name: Pond-221771

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 289678.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VHKX

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30095

research_project: RP-192

root_sample_id: SM-2TD16

sample_id: SM-3VHKX

work_request: 35112

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-02 13:23:59.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 1 run, 1.8M spots, 356.4M bases, 171.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR770106	1,764,145	356.4M	171.7Mb	2013-03-11

ID:: 340948

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